Journal: Scientific Reports
Article Title: De-novo transcriptome analysis unveils differentially expressed genes regulating drought and salt stress response in Panicum sumatrense
doi: 10.1038/s41598-020-78118-3
Figure Lengend Snippet: In silico expression analysis of Unigenes. ( a ) DEGs in leaves, ( b ) in roots under control and stress conditions. The short reads from individual sample libraries (including replicates) were mapped onto the assembled transcriptome using Bowtie2 and abundance was calculated using RSEM. DEGs were identified using the Empirical Analysis of Digital Gene Expression (edgeR) statistical package. The heat maps were generated using MeV v 4.8.1, and indicate the relative transcript level of genes. Detailed information about the DEGs is provided in Supplementary table .
Article Snippet: Differentially expressed genes (DEGs) among the treated and control libraries were calculated by using the Empirical Analysis of Digital Gene Expression (edgeR) ( http://biocon-ductor.org/packages/ release/ bioc/ html/edgeR.html) statistical package.
Techniques: In Silico, Expressing, Control, Gene Expression, Generated